Pests of all varieties pose a significant hazard to the food industry, as they can facilitate the spread of foodborne illnesses by serving as carriers of microorganisms that are the causative agents of these illnesses. Common pests include rodents, insects and birds; depending on geography and climate, other critters can be of concern. Pests contribute to foreign material contamination and adulteration, as they can easily spread disease-causing microorganisms and parasites through their droppings, urine, saliva and body parts. Contamination of food left behind by pests is also a significant source of consumer complaints and negative social media interactions, which can severely erode consumer trust in a company and/or brand.
A common cause of many food recalls is contamination by pests. In 2022, the Canadian Food Inspection Agency issued a recall of food products contaminated by Salmonella due to a rodent infestation. This recall impacted a significant portion of the country, including the western and central provinces. That same year, 400 Family Dollar stores temporarily closed across the US due to a rodent infestation in just one warehouse. In 2023, grocery chain Trader Joe’s recalled more than 10,000 cases of broccoli cheddar soup in seven states due to the presence of insects in the frozen broccoli florets in the soup.
Pest contamination can severely damage both a business’s bottom line and reputation, leading to impacts that can be as significant as bankruptcy or closure. Given the reputational damage that pests can cause, it’s important to remember that a proactive integrated pest management program (IPM) is the cornerstone of any facility’s good manufacturing or good distribution practices program. Mitigating the risks posed by pests can reduce customer complaints and potential recalls.
Common Pests and Their Risks
The most common types of pests in food settings include rodents, insects, birds and other critters specific to the environment and geographic location.
- Rodents: Rats and mice are often the creatures that first come to mind when thinking about pests. Both can carry diseases that pose significant health risks to humans. The CDC lists a wide variety of diseases caused by viruses, parasites, and bacteria that are directly or indirectly carried by rodents. For example, Salmonella bacteria transmitted through rodent droppings can contaminate food products. In addition to contamination that can lead to foodborne diseases, rodents can contribute to visible foreign material contamination of food products and raw materials (which generally causes an overwhelmingly negative reaction in consumers of the products). They can even be the causative agent of health and safety risks to humans, as they can chew through electrical wiring, which then becomes a fire hazard.
- Insects: Whether flying or crawling, insects can be problematic in food handling environments. Flies can contaminate food by carrying foodborne pathogens and may also end up as foreign material contaminants in products. For example, studies have shown that the human pathogenic microorganism E. coli O157:H7 is carried by flies of several species from cattle production areas to leafy green crop fields (Berry et al, 2019). Due to their frequent contact with organic waste materials, flies also transmit other pathogens, such as Salmonella enterica, Listeria monocytogenes, Klebsiella spp., and Campylobacter spp. (Shahanaz et al., 2025). Stored product pests, such as beetles and moths, can be a scourge in dry ingredient facilities, including flour mills. Multiple generations of these types of insects can have a cumulative impact on products and facilities over time, resulting in a loss of quality and quantity of the stored food items. Hardy ants and cockroaches are notoriously difficult to eradicate, requiring multiple treatment cycles and, in many cases, structural reconstruction to eliminate them from the facility. The US Food and Drug Administration classifies four types of cockroaches and two types of ants within their “dirty 22” species list due to their ability to spread foodborne illnesses and act as indicators of unsanitary conditions in food processing and storage facilities.
- Birds: Research shows that there are more than 80 diseases, including Salmonellosis, that can be carried by problem birds such as pigeons and starlings. Birds can carry disease-spreading insects, such as fleas and ticks, while their waste material can teem with bacteria. Bird feces, feathers and nesting materials can fall into food products or onto food contact surfaces, causing direct and indirect contamination. Like rodents, birds can also cause significant damage to the structural integrity of a food facility through their nests and corrosive droppings.
- Other critters: Depending on the location and type of environment the facility is in, other pests can be just as adept at entering and establishing themselves in a facility. For example, in warmer climates, reptiles and invertebrates not already discussed above can be included on the list of pests that a facility can be vulnerable to. The changing climate globally is also impacting the spread of various pests to areas of the world that have not yet encountered these species. With that in mind, it is even more crucial for food processing and storage facilities to adopt a highly proactive approach to pest management.
Mistakes in Pest Management
The main error that facilities make in their pest management strategy is to take a “hands-off” approach, particularly when they contract the management of pests to a third-party organization. In addition, other common mistakes include failing to update pest management plans and train employees regularly, failing to maintain detailed and up-to-date records, and not fully addressing identified areas of noncompliance. All these mistakes can lead to failed audits and, worse still, negative impacts on food safety.
Implementing a comprehensive, proactive pest management program is crucial for mitigating the risks associated with pests in food operations. The organization must have a skilled and trained internal team of pest control professionals or contract a reputable third-party pest control operator (PCO). Even with a reputable PCO by their side, organizations must still take responsibility for maintaining an open dialogue and partnership with that PCO, recognizing that it is not the PCO who is ultimately responsible for the safety and quality of the products going out to the market. Regardless of who is responsible for the service, failure to continually update the program and train those involved in the pest management protocols is a recipe for failure. Audit standards look not only for inspection records, but also for trending and completed corrective actions that include preventive measures. Not having these aspects of the records available will likely result in points lost during audits.
At the forefront of any well-managed pest management program are controls that ensure that pests are excluded from the premises. Gaps under and around doors and windows are among the most frequently cited nonconformities during audit visits. Other common citations include the mismanagement of pest devices, such as interior rodent devices, insect light traps and bait stations. Ensuring that employees are empowered to report concerns they observe regarding the facility’s structure and the devices placed around the premises is a tremendous asset to the success of the pest program.
Easy, Implementable Fixes
Mistakes may be unavoidable; however, several fixes can quickly support an organization with better pest management. First, establish a close working relationship between the facility’s leadership team and the pest management team, as well as any third-party providers. Frequent discussions about pest pressures, incidents, concerns and trends can help ward off potential issues and develop more proactive solutions.
Second, conduct ongoing surveillance by both the pest management team and properly trained internal personnel, through the checking of pest devices and inspecting the facility for signs of pest activity, entry points and infestation. Concurrently, seek out and implement accessible solutions for adequate documentation. Many pest control providers offer electronic monitoring systems that allow for easily retrievable details during reviews and inspections.
Third, train the facility’s workforce on pests and management strategies as a whole. Work with your PCO to ensure that employees are as up to date as possible on the pest protocols and techniques being used in the facility. Train employees to be vigilant about excluding pests, including those that may enter the facility through employees’ items, and to report any concerns they observe.
Meeting Audit Requirements
Audit standards are rooted in food safety and typically have expectations regarding the establishment and full implementation of a pest management program, including the expertise required, the techniques used, the monitoring completed and the corrective actions implemented. Indeed, one of the best ways to get “audit-ready” is to engage with a competent, licensed PCO. However, regardless of whether working with a third-party PCO or sourcing that competency and knowledge from within the organization, all facilities must remember that pest management is the responsibility of every employee at the facility. It will be through the support of the management team in the implementation of a proactive pest management program that builds on the cooperation of all individuals within the organization (and without, in the case of a third-party PCO) that a positive culture around the elimination of pest-related hazards and, by extension, positive outcomes during audits can be realized.
References
Occurrence of Escherichia coli O157:H7 in Pest Flies Captured in Leafy Greens Plots Grown Near a Beef Cattle Feedlot
Elaine D. Berry, James E. Wells, Lisa M. Durso, Kristina M. Friesen, James L. Bono, Trevor V. Suslow
Journal of Food Protection, volume 82, issue 8, August 1, 2019
Flies as Vectors of Foodborne Pathogens Through Food Animal Production: Factors Affecting Pathogen and Antimicrobial Resistance Transmission
Eshita Shahanaz, KirstenM. Zwally, Cameron Powers, Brandon Lyons, Phillip Kaufman, Giridhar Athrey, Thomas M. Taylor
Journal of Food Protection, volume 88, issue 7, June 23, 2025

